Sunday 22 June
| 9:00AM - 9:15AM | Welcome Address |
| Convener: Bill Jordan | |
| 9:15AM - 1:15PM | W1: AOHUPO Membrane Protein Initiative Workshop (MPI) |
| Mark Baker: Desperately Seeking Comprehensive Mammalian Membrane Proteomics abs#101 | |
| Tzong-Hsien Lee: Chromatographic Separation of Intact Proteins from Mouse Liver Microsomal Proteins for Membrane Proteome Analysis abs#102 | |
| Richard Simpson: Solubility-based phase partitioning of mouse liver microsomes using Triton X-114 abs#104 | |
| Kazuyuki Nakamura: 1D-SDS-PAGE and nano-LC-MS/MS for membrane proteomics of mouse liver microsomes (MPI sample) and its application to human proteomics of ER from Jurkat cells abs#105 | |
| 10:15AM - 10:45AM | Coffee Break |
| Maxey Chung: Digging deeper into the mouse liver membrane proteome: Evaluation of different membrane protein digestion approaches with 8-plex iTRAQ reagents abs#106 | |
| Hosseini Saledekh: Proteome analysis of mouse liver microsomal fraction using 2D BN/SDS-PAGE abs#107 | |
| Eugene Kapp: Membrane Proteome Initiative Informatics: Exploring the feasibility of high-confidence protein lists based on consensus | |
| Tai-Long Pan: Zoom IEF fractionator & SDS-PAGE to identify membrane proteins effectively abs#109 | |
| Ravi Sirdeshmukh: Comparison of Experimental Methods and Instrumentation Used for Identification of Membrane Proteins from the MPI Reference Sample abs#110 | |
| Jongshin Yoo: Title to be advised abs#111 | |
| Terrence Poon: Technical Hurdles When Applying Isoelectric Focusing to Membrane Proteome Analysis abs#136 | |
| 12:30PM - 1:00PM | Lunch Break |
| 1:00PM - 2:30PM | W2: MPI Manuscript Workshop |
| Group discussion to plan manuscripts | |
| 2:30PM - 4:45PM | W3: Invitrogen ProtoArray Education Workshop
Session sponsored by: Invitrogen
|
| Michael Smith: Applications of Functional Protein Microarrays abs#112 | |
| Dr. Erlend Ragnhildstveit: Purification and Validation | |
| 5:00PM - 5:30PM | Opening Ceremony & Welcome Addresses |
| Convenor: Richard Simpson
Australasian Proteomics Society (APS): Prof Richard Simpson AOHUPO President: Prof Young-Ki Paik Protein Science Society of Japan (PSSJ): Prof Tomitake Tsukihara President JST/CREST: Prof Tairo Oshima Lorne Proteins (LPS): Prof Ray Norton |
|
| 5:30PM - 6:30PM | P1: Plenary Lecture
Chair: James Whisstock and Tomitake Tsukihara Session sponsored by: JST/CREST
|
| Randy Read: New structures from old: developments in molecular replacement abs#001 | |
| 6:30PM - 8:30PM |
Welcome with Trade
Session sponsored by: Bruker
Biosciences
|
Monday 23 June
| 8:00AM - 7:00PM | Registration |
| 8:30AM - 10:00AM | SOA1: State-of-the-Art Lectures
Chair: Bill Jordan & Ben Herbert Session sponsored by: BioRad Laboratories
|
| Stephen Kent: Through the Looking Glass – a New World of Proteins Enabled by Chemistry abs#002 | |
| Egisto Boschetti: The ProteoMiner and the FortyNiners: Searching for Gold Nuggets in the Proteomic Arena abs#003 | |
| 10:00AM - 10:30AM | Coffee Break / Poster Review / Exhibition Viewing Period |
| 10:30AM - 12:30PM | S1A (Concurrent): Stem Cell Proteomics
Chair: Bonghee Lee and Salekdeh Hosseini Session sponsored by:
Invitrogen
|
| Bonghee Lee: Wnt signaling plays a key role in human neural stem cell differentiation into oligodendrocyte progenitors abs#004 | |
| Hosseini Salekdeh: Transcriptome and Proteome analyses of Human, Monkey, and Mouse Embryonic Stem Cells during Embryoid Body-Based Differentiation abs#005 | |
| Ravi Sirdeshmukh: Integrated Approach to Study Mouse Embryonic Stem Cell Proteome abs#006 | |
| Jong Bhak: Bioinformatic infrastructure for maintaining proteome information abs#007 | |
| 10:30AM - 12:30PM | S1B (Concurrent): JST/CREST
- Innovative Protein Science 1 Chair: Stephen White and Tairo Oshima |
| Yuji Sasaki: Dynamical Single Molecular Observations of Membrane Proteins Using X-rays abs#008 | |
| Masashi Suzuki: Discrimination between DNA sequences and between coregulator amino acids by feast/famine regulatory proteins (FFRPs) abs#009 | |
| Akihito Yamaguchi: Structure and Mechanism of the Tripartite Multidrug Exporter abs#010 | |
| Young-Ho Jeon: Solution structure of Mst1 SARAH domain and its interaction with Rassf5 and WW45 SARAH domains for the apoptosis pathway abs#011 | |
| 12:30PM - 12:45PM | Lunch Collection |
| 12:45PM - 2:30PM | TS1 (Trade Session): Invitrogen - Tools in Biomarker Discovery Technologies and Panel Discussion |
| Erlend Ragnhildstveit: Sample Fractionation using Magnetic Beads abs#113 | |
| Jurgen Vanhauwe: Drill deeper into the proteome abs#114 | |
| Maxey Chung: Screening of autoantigens from gastric cancer patient sera using the Invitrogen ProtoArrays abs#115 | |
| 12:45PM - 2:30PM | TS2 (Trade Session): Agilent - The Application of Advanced Proteomics Tools to Better Understand the Biological Basis of Disease |
| Christopher Gerner: Secretomes of differently stimulated human dendritic cells generated by 2D-PAGE and shotgun analysis. abs#116 | |
| Christine Miller: Recent advances in LC/MS technologies from Agilent abs#117 | |
| Phil Doble: Elemental Bioimaging abs#118 | |
| 2:30PM - 3:45PM | S2A (Concurrent): Proteomics Applications I
Chair: Othamn Iekhsan and Shui-Tein Chen |
| John Bennet: Insights into drought responsiveness in rice at the reproductive stage through proteomic analysis abs#012 | |
| Chantragan Srisomsap: Proteomic Alteration During Storage of Curcuma longa Rhizomes abs#014 | |
| Tzu-Ching Meng: Mass spectrometry-based substrate identification and genetic validation reveal the functional role of Drosophila protein tyrosine phosphatase dPTP61F abs#015 | |
| 2:30PM - 3:45PM | S2B (Concurrent): JST/CREST
- Innovative Protein Science 2 Chair: James Whisstock and Tairo Oshima |
| Osamu Nureki: Gating control; mechanism of magnesium transporter MgtE abs#016 | |
| Stephen White: Translocon-Assisted Folding of Membrane Proteins: New insights into Lipid-Protein Interactions. abs#017 | |
| Junichi Takagi: Development of a novel peptide affinity tag system for one-step purification of recombinant proteins abs#018 | |
| Andrew Wang: Prenyltransferases as targets for the discovery of new antibiotics abs#019 | |
| 3:45PM - 5:00PM | PS1: Poster Session 1 |
| Nur Abdullah: Effects of Ficus deltoidea extract on the serum protein profile of Simultaneously Hypertensive Rats (SHR) abs#201 | |
| Shadab Ahmad: Magnetic Bead Based affinity profiling for Biomarker Identification: Identifying potential pitfalls abs#202 | |
| Noriaki Arakawa: Proteomic analysis for identification of therapeutic targets of ovarian clear cell carcinoma abs#203 | |
| Georgia Arentz: Identification of Colorectal Cancer Biomarkers using Laser Micro-Dissectiona and 2D DIGE abs#204 | |
| James Broadbent: Development of an enhanced proteomic method to detect potential prognostic and diagnostic markers of healing in chronic wound fluid abs#205 | |
| Ying Chang: Mass spectrometry-based analysis of tyrosine phosphoproteomics and identificaiton of substrates of protein tyrosine phosphatase dPTP61F in Drosophila S2 cells. abs#206 | |
| Yuan-Shou Chen: Proteome Analysis of Membrane-Associated Events during Early Stages of the Epithelial-Mesenchymal Transition abs#207 | |
| Akihiro Chiba: The stimulatory effect of various salts on yeast alcohol dehydrogenase activity abs#208 | |
| Shan-Ho Chou: Microbial Structural Genomics: Important Biological Functions Executed by Interesting Protein Structures abs#209 | |
| Emmanuelle Claude: Coupling MALDI MS with high-efficiency ion mobility spectrometry for tissue Imaging of low mass endogenous compounds abs#210 | |
| Mark Condina: A Sensitive Magnetic Bead Approach for the Detection and Identification of Tyrosine Phosphorylation in proteins by MALDI- TOF/TOF mass spectrometry. abs#211 | |
| Tanusree Das: A comprehensive understanding of adaptation of the enteric pathogen Vibrio cholerae to bile abs#212 | |
| Claire Delahunty: The Proteome of Human Parotid and Submandibular/Sublingual Gland Salivas abs#213 | |
| Cristobal dos Remedios: Intercalated Disc: Changes In Multiple Proteins Associated With Heart Failure abs#214 | |
| Sarah Dower: Isolation and evaluation of different peroxisomes subppopulations from rat liver abs#215 | |
| Teppei Ebina: Loop length dependent SVM prediction of domain linkers abs#216 | |
| Ali Fathi: Differential molecular analysis of Human embryonic stem cells versus Embyoide bodies abs#217 | |
| Steve Freeby: Enrichment of Interleukins and Low Abundance Proteins from Tissue Leakage in Serum Proteome Studies using ProteoMiner™ beads abs#218 | |
| Johan Gustafsson: Imaging mass spectrometry (IMS) and its application to murine tissues abs#219 | |
| Atsushi Hirano: Application of arginine to increase the solubility of poorly water-soluble compounds abs#220 | |
| Asami Hishiki: Structural basis for novel interactions between human translesion synthesis polymerases and PCNA abs#221 | |
| C Hughes: The utility of Ion Mobility Spectrometry to Separate Candidate Precursors From Background Ions and Species of Different Charge States in Tandem MS experiments abs#223 | |
| Wei Jia: MS2 and MS3 Properties of Partially Deglycosylated Core Fucosylated Glycopeptides in Ion Trap abs#224 | |
| Hong Jin: Comparative proteomic analysis of drug sodium iron chlorophyllin addition to Hep3B cell line abs#225 | |
| Shunsuke Kamijo: Improvement of orthogonality between the amber suppression system and the translation system of Ecoli abs#226 | |
| Shunsuke Kamijo: Investigateion of requirements for the KMSKS loop in aminoacyl-tRNA synthetase by random PCR method abs#227 | |
| Sutin Kingtong: Proteome analysis reveals Indian-rock oyster, Saccostrea forskali proteins dysregulated by the environmental pollutant tributyltin. abs#229 | |
| Angelika Koepf: Liquid Chromatographic Protein Separation Coupled to Top- down and Bottom-up Mass Spectrometric Analysis abs#230 | |
| Victoria Kopetz: Proteomic studies into the human coronary microvasculature: Plasma protein profiles during acute coronary syndrome presentation abs#231 | |
| Suguru Koyama: Analysis of sequence specificity for calpain by monitoring cleavages of multiple peptides using iTRAQTM and 2D-LC-MS/MS. abs#232 | |
| Daisuke Kuroda: H3-rules, progress report 2007 abs#233 | |
| Jim Langridge: Coupling Two-Dimensional Liquid Chromatography With Esi Ms For Label-Free Absolute Protein Quantification abs#234 | |
| Seung-Taek Lee: Cleavage and functional loss of human apolipoprotein E by digestion of matrix metalloproteinase-14 abs#235 | |
| Justin Lim: Proteomic analysis of exosomes derived from SW480 colon cancer cells with functionally restored full-length adenomatous polyposis coli abs#236 | |
| Nai-Yu Liu: Human plasma protein PTMome project and biomarker discovery abs#237 | |
| Shuang Lu: Mass spectrometry identification of histone H2B variants and their post-translational modifications during spermatogenesis abs#238 | |
| Therese McKenna: Generation of unique protein specific MRM signatures; Using peptide information from alternate scanning LC-MS data to drive MRM development. abs#239 | |
| Norifumi Muraki: Structure of Protochlorophyllide reductase Reveals a Mechanism for Greening in the Dark abs#240 | |
| Shamim Mushtaq: Immunolocalization and dynamic expression of Albumin precursor and Hsp70 in wound healing of corneal epithelial cells abs#241 | |
| Saurabh Nagpal: Detergent Removal from Protein samples using SDR HyperD ® and Mass-spectrometry Based Detergent Estimation. abs#242 | |
| Jason Chun Hong Neo: Zebrafish Imaging: A MALDI MS Imaging Approach abs#243 | |
| Hideaki Ohtomo: Crystal structure of a chimeric β-lactoglobulin, Gyuba abs#244 | |
| Cheng Cheng Ooi: Biological And Proteomic Analysis Of Butyrate And Its Metabolite, 3-Hydroxybutyrate, In HT-29 Human Colorectal Cancer Cells abs#245 | |
| Matt Padula: Identification of proteins, enzymes and potential vaccine candidates from the Aust Paralysis Tick, Ixodes holocyclus using 2D-PAGE and Equalizer technology. abs#246 | |
| Matthias Pelzing: Complete Characterizing of Erythropoietin Glycoforms using Capillary Zone Electrophoresis Coupled to Mass Spectrometry abs#247 | |
| Sushma Rao: Comparative analyses of abscisic acid responses in plants abs#248 | |
| Siti Rosli: Identification Of Differentially Expressed Proteins In The Serum Of Oral Cancer Patients By Two Dimensional Gel Electrophoresis abs#249 | |
| YuLin Sun: Quantitative Proteomic Analysis Revealed Tissue Transglutaminase 2 Could Be a Novel Protein Candidate of Hepatocellular Carcinoma abs#250 | |
| Toshiyuki Tanaka: Two isoforms of ubiquitin carboxyl-terminal hydrolase isozyme L1 (UCH-L1) were down-regulated in high metastatic potential of human SN12C renal cell carcinoma cell clones. abs#251 | |
| Hiroki Tanaka: Structural mechanism of molecular interaction triggered by synaptic adhesion protein abs#252 | |
| Samantha Tang: MALDI-TOF-MS identification of Intermittent Hypercapnic Hypoxia induced protein changes in the Piglet Hippocampus. abs#253 | |
| Chai Lean Teoh: Applying Spectroscopic Rulers to ApoC-II Amyloid Fibrils abs#254 | |
| Goro Terukina: Proteomic analysis of XFKBP-associated protein complex formed during secondary axis formation in Xenopus laevis embryo abs#255 | |
| Chitra Thangavel: High-Throughput Purification of Polyhistidine Tagged Proteins in AcroPrepTM Multi-well Filter Plates Using IMAC HyperCelTM. abs#256 | |
| Norihisa Uemura: Prognostic biomarker in esophageal cancer by 2D-DIGE, tumor tissues and clinical data abs#257 | |
| Yan Wang: Differential ConA-enriched Urinary Proteome in Rat Experimental Glomerular Diseases abs#258 | |
| Harunori Yoshikawa: Proteomic analysis of proteins associated with splicing factor-2 associated protein p32 revealed its possible involvement in human ribosome biogenesis abs#260 | |
| Rie Yoshino: The Effect of Plant Compounds from Whisky Cask on Horse Liver Alcohol Dehydrogenase Activity abs#261 | |
| Kunkun Zhang: Leptospira interrogans Selectively Binds Guinea Pig Serum Proteins in vitro abs#264 | |
| Eugene Kapp: A Common Sequence Database Format in Proteomics abs#265 | |
| Rommel Mathias and David Greening: Differential detergent separation of mouse liver microsomal proteins using Triton X-114 abs#266 | |
| 5:00PM - 7:00PM | S3A (Concurrent): Advances in Proteomic Techniques
Chair: Louis Fabri and Hisashi Hirano |
| Robert Moritz: Utilising a large computing resource for your Proteomics research “The Australian Proteomics Computational Facility” - using the APCF for Biomarker discovery abs#020 | |
| Herbert Thiele: Managing Proteomics Data from Generation and Data Warehousing to Central Data Repository abs#021 | |
| Pengyuan Yang: Selective Separation of Glycopeptides and Glycoproteins by Aminophenylboronic Acid-Functionalized Magnetic Nanoparticles abs#023 | |
| Hiroyuki Kaji: LC/MS-based large-scale identification of N-glycoproteins and their glycan diversity abs#022 | |
| Xiaohong Qian: Development of Magnetic Nanoparticles and Its Application in Phosphoproteome of Liver abs#024 | |
| Toshihide Nishimura: Formalin-Fixed Paraffin-Embedded (FFPE) Clinical Proteome Initiative of Lung Cancer abs#025 | |
| 5:00PM - 7:00PM | S3B (Concurrent): Developments in Structural Biology
Chair: Michael Parker and Fumio Arisaka |
| Ryota Kuroki: Crystal Structure of the Human Granulocyte Colony Stimulating Factor Receptor Signaling Complex abs#026 | |
| Chwan-Deng Hsiao: Crystal structure of the human FOXO3a-DBD/DNA complex suggests the effects of post-translational modification abs#027 | |
| Fumio Arisaka: Structural Analysis of Baseplate Wedge Proteins of BacteriophageT4 abs#028 | |
| Haruki Nakamura: Development of Protein Structure Databases and their Applications to Functional Annotation abs#029 | |
| James Whisstock: MACPF proteins - eukaryote cytolysins in defence and attack abs#030 | |
| 7:00PM - 11:00PM | Student Dinner (SoAPS)
Students of APS (SOAPS) to host students of AOHUPO (SOAOHUPO) informal get-together for dinner/drinks
|
Tuesday 24 June
| 8:30AM - 9:30AM | P2: Plenary Lecture
Chair: Robert Moritz Session sponsored by: Thermo Fisher Scientific
|
| John Yates: Driving Biological Discovery Using Quantitative Mass Spectrometry abs#031 | |
| 9:30AM - 10:00AM | Coffee Break / Exhibition Viewing Period |
| 10:00AM - 12:00PM | S4A (Concurrent): Novel Disease Biomarkers and Massive Array Screen
Chair: Peter Hudson and Maxey Chung Session sponsored by: GE
Healthcare
|
| Fredrik Ponten: Mapping the Human Proteome abs#032 | |
| Richard Christopherson: Surface profiling of leukaemias, lymphomas and colorectal cancers using a CD antibody microarray abs#033 | |
| Sanjay Navani: Antibody-Based Proteomics abs#034 | |
| Caroline Kampf: A Human Protein Atlas abs#035 | |
| Kazuyuki Nakamura: Cys-tag proteins on chips for functional proteomics abs#036 | |
| 10:00AM - 12:00PM | S4B (Concurrent): Macromolecilar Molecules and Interaction
Chair: Matt Perugini Session sponsored by: ASBMB
|
| Youhe Gao: Characterizing binding properties of protein interaction domain abs#037 | |
| Juliet Gerrard: Unravelling the mechanism of dihydrodipicolinate synthase: are the essential active site residues really essential? abs#038 | |
| Yongzhang Luo: Discovery of a New Extracellular Chaperone abs#039 | |
| Zengyi Chang: Modulation of protein activities via Homo-oligomerization: a phenomenon that has been underappreciated abs#040 | |
| P.-H Liang: Discovery of inhibitors against 3C proteases of SARS coronavirus, enteroviruses 71, and coxsackievirus B3 abs#041 | |
| 12:00PM - 12:15PM | Lunch Collection |
| 12:15PM - 2:00PM | TS3 (Trade Session): Bruker Maldi Imaging Workshop - “The Complete MALDI Imaging Workflow – Tissue and Drug Imaging Solutions” |
| Pierre Chaurand: MALDI Imaging MS, the nuts and bolts of the technology abs#119 | |
| Matthias Pelzing: Bruker Class Imaging: From sample preparation to biostatistical analysis of MALDI Tissue Imaging Data for the Diagnostics of Tissue Health States. abs#120 | |
| Peter Hoffmann: Imaging mass spectrometry (IMS) application to murine tissues abs#121 | |
| 12:15PM - 2:00PM | TS4 (Trade Session): Biorad Laboratories - Tools in the Proteomic Workflow |
| Ben Herbert: Enriching low abundance proteins by proteome-wide affinity using a combinational hexapeptide library abs#122 | |
| Amanda Bulman: Strategies for SELDI-Based Biomaker Discovery and Development abs#123 | |
| Egisto Bosschetti: Evaluation of a Standardized Method of Protein Purification and Identification after Discovery by Mass Spectrometry abs#124 | |
| 2:00PM - 3:00PM | S5A (Concurrent): Mass Imaging
Chair: Peter Hoffmann and Xiaohong Qian Session sponsored by: Bruker Biosciences
|
| Pierre Chaurand: MALDI mass imaging mass spectrometry of tissue sections: state of the art and future directions abs#042 | |
| Philip Doble: Metal-imaging mass spectrometry (MIMS): A new imaging mass spectrometry technology to determine the distribution of metal ions in tissue samples abs#043 | |
| Christina Buchanan: Photographs and Memories: as snapshot of cultured endocrine cells abs#044 | |
| Anthony White: Mapping Novel Copper-Regulated Signalling Pathways Using Antibody Arrays And In Silico Protein Network Analysis. abs#045 | |
| 2:00PM - 3:00PM | S5B (Concurrent): Protein Dynamics
Chair: Hideo Akutsu and Zengyi Chang |
| Stephen Watt: Using Ion Mobility/Time-of-Flight Mass Spectrometry to Determine Conformational Properties of Proteins abs#046 | |
| Hideki Taguchi: Direct observation of yeast prion dynamics in single-living cells abs#047 | |
| Ashley Buckle: Rapid Protein Structure Determination using Distributed Computing abs#048 | |
| 3:00PM - 3:45PM | PS2A: Poster Session 2A |
| Renwick Dobson: In vivo evolution of Escherichia coli pyruvate kinase type I: how does genotypic evolution affect phenotype? abs#301 | |
| Cristobal dos Remedios: The Aging Human Heart: Changes in expression of LIM domain proteins abs#302 | |
| Sarah Dower: Enrichment of Phosphopeptides by Free Flow Electrophoresis abs#303 | |
| Sarah Dower: Versatile Analyses Of Free Flow Electrophoresis Separated Protein Isoforms abs#304 | |
| Ayako Egawa: Structural analysis of transmembrane halobacterial tranceducer pHtrII by multi-dimensional high-resolution solid-state NMR abs#305 | |
| Toru Ezure: Posttranslational modifications in an insect cell-free protein synthesis system and their identification by MALDI-TOF MS abs#306 | |
| L Fremlin: A New Sensor-Controlled Preparation Technique for MALDI Tissue Imaging abs#307 | |
| Kazuo Fujiwara: OLIGAMI: OLIGomer Architecture and Molecular Interface abs#308 | |
| Qian Garrett: Bovine Lactoferrin Promotes Alkali-Induced Wound Healing in Corneal Epithelial Cells by Up-regulating IL-6 and PDGF abs#309 | |
| Michael Griffin: Amyloidogenic peptides from apolipoproteins A-I and C-II: Lipid effects on fibril forming peptides from lipid binding proteins. abs#310 | |
| Rudolf Grimm: Rapid analysis of 1D and 2D gels by nanoflow LC/MS abs#311 | |
| Yoko Harano: Data deposition supporting website at Osaka for BioMagResBank and Protein Data Bank abs#312 | |
| Junichi Higo: An enhanced conformational sampling of a 40-residue protein consisting of alpha and beta secondary structures in explicit solvent abs#313 | |
| David Hoke: The marine bacterium Pseudoalteromonas tunicata alters its proteome upon adhesion to extracellular matrix abs#314 | |
| Masaki Ihara: Establishment of Open Sandwich immunoassay using antibody fragments derived from combinatorial libraries abs#315 | |
| Haruka Ikegami: Discovery of a protein biomarker candidate related to carcass weight in Japanese Black beef cattle (Wagyu) abs#316 | |
| Masaya Ikegawa: Profiling cerebrospinal fluid proteins in multiple sclerosis by CLINPROT system abs#317 | |
| Hong Ji: DIGE analysis of Ras-transformed fibroblast cell-derived exosomes abs#318 | |
| Narutoshi Kamiya: Assembly simulation of four peptide chains in explicit water by multicanonical molecular dynamics abs#319 | |
| Yasushi Kawata: Identification of the functionally critical amino acid segment and its role in the flexible C-terminal region of the chaperonin GroEL abs#320 | |
| Runcong Ke: Analysis of human proteins with charge periodicity of 28 residues in amino acid sequences abs#321 | |
| James Ketudat Cairns: Structural Basis for Substrate Specificity in Rice and Barley Beta-Glucosidases abs#322 | |
| Chuang Fong Kong: Identification of phosphoproteins and profiling of phosphorylation sites in complex biological samples: A simple and efficient workflow using mini-gel-separated proteins abs#323 | |
| Kunihiro Kuwajima: Folding Mechanisms of Homologous Proteins: A Comparative Study between Lysozyme and α-Lactalbumin abs#324 | |
| Sing Li: Plasma proteomes as a basis for searching potential septic biomarkers in intensive care units abs#325 | |
| Chuan Li: Protein arginine methylation of the cellular nucleic acid binding protein (CNBP) abs#326 | |
| Shufang Liang: Investigating action mechanism of a natural active compound honokiol by quantitative proteomic analysis abs#327 | |
| Rita Machaalani: SELDI-TOF MS analysis of the effects of post-mortem interval on rat brain proteomics. abs#328 | |
| Diane McCarthy: Strategies for Discovery and Characterization of Novel Biomarkers Using SELDI Technology abs#329 | |
| Matthew McDonagh: Proteomic investigation of developmental and biochemical effects on expression of cytosolic and mitochondrial proteins in four ovine muscles abs#330 | |
| Christine Miller: The combination of accurate fragment mass and a new database search algorithm for the identification of unexpected modifications abs#331 | |
| Kanako Nakagawa: The stabilization mechanism of the intermediate structure of equine beta-lactoglobulin abs#332 | |
| Atsushi Nakagawa: High-resolution X-ray Crystallography Studies of the H-protein of Glycine Cleavage System abs#333 | |
| Tsuyoshi Nakanishi: Development of On-Membrane Profiling Method for Phosphoproteins abs#334 | |
| Jason Chun Hong Neo: Validation of Far Upstream Binding Protein (FUBP) isoforms in Human Hepatocellular Carcinoma Samples using MRM Initiated Detection And Sequencing (MIDAS) approach abs#335 | |
| Yoshihiro Ochiai: Characterization of subfragment-2 regions of myosins from invertebrate and vertebrate striated muscles abs#336 | |
| Takatoshi Ohkuri: The involvement of the residual structure containing long-range interactions on the denatured state of a protein in the amyloid fibrils formation. abs#337 | |
| Yasuko Ono: Analysis of structure-function relationships of p94 by proteinase-trapping system abs#338 | |
| Sam-Yong Park: Crystal structures of the clock protein EA4 from the silkworm Bombyx mori abs#339 | |
| M Pelzing: Class Imaging: Classification of Breast Cancer Sections by MALDI Tissue Imaging abs#340 | |
| Matthias Pelzing: Detailed Annotation of Qualitative Differences in Recombinant Protein Samples –A QC Exercise. abs#341 | |
| Lifeng Peng: Quantitative proteomic analysis of bovine mammary biopsies based on differential fractionation and label-free mass spectrometry abs#342 | |
| Tobias Preckel: Alternative Two Dimensional Electrophoresis - OFFGEL electrophoresis combined with high sensitivity microfluidic on-chip protein detection abs#343 | |
| Noriyuki Sakiyama: Prediction of nuclear proteins with a charge periodicity of 28 residues in eukaryote genomes abs#344 | |
| Kenji Sasahara: Heat-induced conversion of β2-microglobulin and hen egg-white lysozyme into amyloid fibrils abs#345 | |
| Kunitsugu Soda: Soft Structure of Proteins Analyzed by Atomic Packing Density and Volume Fluctuation Dynamics abs#346 | |
| Robert Solazzo: Multiple-reaction Monitoring for Quantitation of Protein Phosphorylation abs#347 | |
| Yasuko Ono: Roles of skeletal muscle-specific calpain, p94/calpain 3, on multiple molecular interactions using connectin/titin N2A region as a modulating scaffold. abs#348 | |
| Gedela Srinubabu: Mass Spectrometric Analysis of Proteins Using an Experimental Design: Challenges & Perspectives abs#349 | |
| Mitsunori Takano: Brownian Ratchet Inherent in Fo and F1 Molecular Motors abs#350 | |
| Chor Koon Tan: Ultra-Fast Separation Of Biomolecules Using Superficially Porous Silica Particles - Poroshell abs#351 | |
| Herbert Thiele: Hyphenated Tools for Phospholipidomics abs#352 | |
| Yuko Tsuchiya: Development of a scoring method for predicting protein complex structures abs#353 | |
| Toshiyuki Tsuji: Development of a high performance prediction method for single spanning membrane proteins abs#354 | |
| Hiroshi Ueda: Sensitive noncompetitive detection of osteocalcin terminal peptide by open sandwich immunoassay abs#355 | |
| Eric Xiaojia Wei: Analysis and identification of protein components in deposits on worn contact lenses by liquid chromatography mass spectrometry (LC-MS) abs#356 | |
| Steve Wilson: A metabolomic approach for analysing plant-herbivore interactions abs#358 | |
| Shunjiang Xu: Expression and Localization of Carnitine/Organic Cation Transporter OCTN1 and OCTN2 in Ocular Epithelium. abs#359 | |
| Hideki Yamasaki: Theoretical investigation of the electronic asymmetry of the special pair cation radical in the photosynthetic type-II reaction center abs#360 | |
| Terry Zhang: Application of LTQ Orbitrap XL ETDTM for Glycopeptides Analysis abs#361 | |
| Zhenjun Zhao: Identity of Proteins Extracted from Worn Silicone Hydrogel Contact Lenses abs#362 | |
| Amy Zumwalt: Simplifying the Hunt for Optimal SRM Transitions: Utilizing Discovery Data to Expedite Targeted Peptide Quantitation abs#363 | |
| 3:45PM - 5:00PM | TS5 (Trade Session): GE Healthcare - Showcase of GE Healthcare Proteomic Tools |
| Brian Hood: What's Happening to Proteomics at GE Healthcare?? abs#125 | |
| Invited Guest Speaker: Breaking the Mold – Academic Partnership and Research at GE Healthcare abs#126 | |
| Daniel Haid: A parallel proteomics approach to analyze and validate protein differences in colorectal cancer abs#127 | |
| 3:45PM - 5:00PM | TS6 (Trade Session): Shimadzu Scientific - Mass Spectrometry – Techniques & Application |
| Tsuyoshi Nakanishi: On-Tissue MALDI-MS Analysis with the Chemical Printer (CHIP-1000) abs#128 | |
| Peter Hoffman: Imaging mass spectrometry (IMS) of murine tissues using a piezoelectric printer abs#131 | |
| Toru Ezure: Posttranslational modifications in an insect cell-free protein synthesis system and their identification by MALDI-TOF MS abs#129 | |
| Zhan Zhao Qi: Advantages of LC-MALDI approach for proteomics applications abs#130 | |
| 5:00PM - 6:30PM | SOA2: State-of-the-Art Lectures
Chair: Louis Fabri and Michelle Hill Session sponsored by: CSL
|
| J. Schnitzer: Proteomic imaging of endothelium and caveolae for targeted penetration into single organs and solid tumors abs#050 | |
| Christopher Gerner: Establishment of a secretome database of primary and cultured cells for biomarker discovery abs#051 | |
| 6:30PM - 10:30PM | Optional Tjapakai Aboriginal Cultural Centre Dinner |
Wednesday 25 June
| 8:30AM - 9:30AM | P3: Plenary Lecture
Chair: Ray Norton and Hideo Akutsu Session sponsored by: JST/CREST
|
| Ad Bax: Insight into structure and dynamics from weak alignment NMR abs#052 | |
| 9:30AM - 10:00AM | Coffee / Exhibition Viewing Period |
| 10:00AM - 12:00PM | S6A (Concurrent): Mass Spectrometry
Chair: Jong Shin Yoo and Robert Moritz Session sponsored by: Shimadzu
Scientific
|
| Jong Shin Yoo: Quantitative Analysis of Human Plasma Proteome by Mass Spectrometry for Cancer Biomarker Discovery abs#053 | |
| Mark Larance: Quantitative Phosphoproteomics Reveals a Pathway of mRNA Regulation Downstream of Akt abs#054 | |
| Kathy Ruggiero: Protein expression experiments using iTRAQTM: a unified protocol for design and analysis? abs#055 | |
| Jeffrey Gorman: Comparison of stable-isotope labelling strategies for quantification of phosphosite occupancy and differentiation between phosphorylation and sulfonation of the murine dioxin receptor abs#056 | |
| 10:00AM - 12:00PM | S6B (Concurrent): Amyloid Proteins
Chair: Tony White |
| Yuji Goto: Direct Observation of Amyloid Fibril Formation of b 2-Microglobulin and Amyloid b Peptide abs#058 | |
| Damien Hall: A toy model for predicting the rate of amyloid formation from unfolded protein abs#059 | |
| Ray Norton: Order, disorder and fibril formation in the malaria vaccine candidate MSP2 abs#060 | |
| Michael Parker: Structural biology of Alzheimer's disease abs#061 | |
| Daizo Hamada: Negative Design Principle to Avoid the Formation of Misfolded Aggregates as Revealed by β-Lactoglobulin abs#062 | |
| 12:00PM - 12:15PM | Lunch Collection |
| 12:15PM - 2:00PM | TS7 (Trade Session): Thermo Fisher Scientific - Proteome Dynamics - Integrated Solutions for Protein Characterization and Quantitation |
| Amy Zumwalt: Targeted Protein Quantitation using the SRM Workflow: Making SRM assays routine, robust, and sensitive abs#132 | |
| Maria Prieto Conaway: Bringing high mass accuracy, increased dynamic range and high resolving power to tissue imaging with the MALDI LTQ OrbitrapTM abs#133 | |
| Terry Zhang: New developments in ETD on LTQ Orbitrap XL and its applications abs#134 | |
| 12:15PM - 2:00PM | TS8 (Trade Session): Waters - Securing Your IDENTITY - New stringency for protein identifications |
| Stephen Watt: Securing Your IDENTITY - New stringency for protein identifications abs#135 | |
| 2:00PM - 3:30PM | S7A (Concurrent): Clinical Proteomics I
Chair: Ravi Sirdeshmukh and Kazuyuki Nakamura |
| Maxey Chung: 2-D DIGE profiling of Hepatocellular Carcinoma Tissues identified isoforms of Far Upstream Binding Protein (FUBP) as novel candidates in liver carcinogenesis abs#063 | |
| Shui-Tein Chen: Enhance proteomic detection limitation by combinatorial peptide and nucleotide library abs#064 | |
| Hisashi Hirano: Identification and Validation of Ovarian Cancer-Associated Proteins abs#066 | |
| Srinuabu Gedela: Proteomic Analysis of Cytokines in Diabetes Patients: An Experimental Design Approach abs#067 | |
| 2:00PM - 3:30PM | S7B (Concurrent): Synchrotron Technologies - Current Studies
Chair: Andy Wang and Ashley Buckle |
| Jennifer Martin: United we stand: combining structural methods abs#068 | |
| Yao-Chang Lee: Application of Synchrotron Infrared Miscrospectroscopy and Imaging to Biological studies abs#070 | |
| Rob Lewis: What are they doing over there? abs#071 | |
| 3:30PM - 4:00PM | PS2B: Poster Session 2B |
| 4:00PM - 4:45PM | SOA3: Start-of-the-Art Lecture
Chair: Richard Simpson Session sponsored by: Invitrogen
|
| Ileana Cristea: Advances in Rapid Isolations of Protein Complexes: Revealing the Dynamic Viral-Host Interactome abs#072 | |
| 4:45PM - 6:15PM | S8A (Concurrent): Clinical Proteomics II
Chair: Young-Ki Paik and Terence Poon Session sponsored by: Shimadzu
Scientific
|
| Kylie Hood: Examination of alterations in the protein profile of colorectal cancer cells during invasion and metastasis abs#073 | |
| Tadashi Kondo: Cancer proteomics for personalized medicine abs#074 | |
| Young-Ki Paik: Discovery and validation of serological HCC biomarkers abs#086 | |
| 4:45PM - 6:15PM | S8B (Concurrent): Proteomics and Pathogens
Chair: Thomas Nebl and Stuart Cordwell |
| Thomas Nebl: A comprehensive immunoproteomic analysis of the repertoire of human antibody responses to the malaria parasite Plasmodium falciparum abs#076 | |
| James MacRae: Metabolite profiling in Plasmodium falciparum. abs#078 | |
| 6:15PM - 10:30PM | Conference Dinner/Aussie BBQ
Session sponsored by: Invitrogen
|
Thursday 26 June
| 9:00AM - 10:30PM | S9A (Concurrent): Clinical Proteomics III
Chair: Kylie Hood and John Bennett |
| Terence Poon: Application of glycomics to the diagnosis of liver diseases abs#080 | |
| Oliver Bernhard: Detection of biomarkers for colorectal cancer by ranking of soluble-secreted proteins (RSSP) abs#081 | |
| Rakesh Mishra: Characterization of nuclear Matrix proteome of Drosophila melanogaster during embryonic development abs#079 | |
| 9:00AM - 10:30PM | S9B (Concurrent): Infectious Diseases
Chair: Malcolm McConville and Richard Christopherson |
| Ben Herbert: Fungal lung infection : understanding Cryptococcus gattii infection and the challenges of mixed proteomes abs#083 | |
| Chitra Mandal: Glycoproteomics of Pseudomonas aeruginosa, an opportunistic pathogen abs#084 | |
| Rajan Sankaranarayanan: Structure-function analysis of enzymes involved in the complex lipid cell wall synthesis of Mycobacterium tuberculosis abs#085 | |
| 10:30AM - 11:00AM | Coffee / Exhibition Viewing Period |
| 11:00AM - 1:00PM | S10A (Concurrent): Clinical Proteomics IV
Chair: Mark Baker and Pengyuan Yang |
| Sumiko Kurachi: Global analyses of age-related expression profiles of mouse liver proteins and database construction abs#075 | |
| Tesshi Yamada: Cancer Proteomics for the Identification of Biomarkers and Therapy Targets abs#087 | |
| Tadashi Yamomoto: Human glomerulus proteomics or kidney and urine proteomic project – overview abs#088 | |
| Michelle Hill: PTRF-Cavin is essential for caveola formation - from proteomics to function abs#089 | |
| 11:00AM - 1:00PM | S10B (Concurrent): Immunology - Structural Genomics and Proteomics
Chair: Tony Purcell |
| Jamie Rossjohn: T cell recognition and the Atkins diet abs#092 | |
| Ren Dobson: Structure and Evolution of a Novel Dimeric Enzyme from a Clinically-Important Bacterial Pathogen | |
| Nicholas Williamson: T cell recognition of chemically diverse ligands abs#093 | |
| Ting-Fang Wang: Right or left turn? RecA family protein filaments promote homologous recombinationthrough clockwise axial rotation. abs#094 | |
| 1:00PM - 1:30PM | Closing Ceremony and Poster Awards |